Private Boat Trip to Comino: Blue Lagoon and Crystal Lagoon

Overview

Set off on a private boat trip around Comino island, Malta, to explore the crystalline waters of the Blue Lagoon and Crystal Lagoon. Accompanied by a skipper, you will enjoy a flexible itinerary where you can choose your stop-off points for swimming or snorkelling. The route includes stops at the Blue Lagoon, where the boat anchors in a quieter area to avoid the crowds, and the Crystal Lagoon, renowned for its cliffs and turquoise waters. Depending on the option chosen, you can also discover natural caves and Elephant Head Rock. Three duration options are available: 2, 3, or 4 hours. The meeting point is at Cirkewwa, next to the kiosk, or at Mgarr harbour for a departure from Gozo (by request via SMS during booking). Snorkelling equipment is provided, but a fuel charge of 79 euros for Comino must be paid in cash to the skipper.

Itinerary

1. Blue Lagoon

   Blue Lagoon – Comino The Blue Lagoon in Comino is Malta’s most iconic swimming spot, famous for its crystal-clear turquoise waters and white sandy seabed. With our private boat tour, you’ll avoid the crowded ferry areas and anchor in the quietest part of the lagoon, surrounded by vivid blue waters perfect for swimming and snorkeling. Enjoy the freedom to dive straight from the boat into the clearest waters in Malta for a truly exclusive Blue Lagoon experience.

   · 30 min· Admission included

2. Crystal Lagoon

   Crystal Lagoon – Comino Crystal Lagoon is one of Comino’s most spectacular spots, surrounded by dramatic cliffs, hidden caves, and shimmering turquoise waters. During our 30-minute stop, you can swim, snorkel, or simply relax and soak up the breathtaking scenery. This calm, sheltered bay is also a popular spot for cliff diving and sunbathing on the boat, offering an unforgettable private experience in the clearest waters of Malta

   · 20 min· Admission included

3. Comino

   Comino Island – Malta Comino Island sits between Malta and Gozo and is world-famous for its dazzling turquoise waters and stunning natural landscapes. Best explored by private boat trip, Comino offers the perfect mix of adventure and tranquility, with crystal-clear lagoons ideal for swimming, snorkeling, and cliff diving. Known for having only one resident and no cars, this tiny island feels untouched and peaceful, accessible only by boat. Visiting Comino by private tour lets you enjoy its bluest waters, hidden coves, and scenic coastlines away from the crowds.

   · Non-stop passage

4. Cirkewwa

   Cirkewwa – Malta Cirkewwa is located at the northern tip of Malta and serves as the departure point for our private boat trips to Comino. This sheltered port is known for its calm, clear blue waters and excellent snorkeling spots, often home to octopus and other marine life. It’s one of Malta’s most scenic coastal areas, making it the perfect place to begin your private boat adventure to the Blue Lagoon, Crystal Lagoon, and the stunning island of Comino.

   · Non-stop passage

5. Outdoor Explorers Malta Gozo Comino

   Outdoor Explorers Malta – Start Point Your private boat tour with Outdoor Explorers Malta can start from either Malta or Gozo, depending on where you’re staying. If you’re on Gozo Island, we depart directly from our Outdoor Explorers location at Mġarr Harbour. Guests staying in Malta start from our base in Ċirkewwa, Mellieħa — an ideal spot for a quick and scenic cruise to Comino’s blue waters. Both departure points offer easy access and smooth boarding, ensuring you begin your private boat trip comfortably and reach Comino in just a few minutes.

   · Non-stop passage

6. St. Mary's Tower

   St. Mary’s Tower – Comino Tower St. Mary’s Tower, also known as the Comino Tower, is one of Malta’s most historic landmarks, built in 1618 by the Knights of St. John. You’ll see this impressive coastal fortress from the boat, just as knights and corsairs once did centuries ago. Perched high above the cliffs, it offers breathtaking views across the island and the Gozo Channel. The tower is a popular photo stop during our private boat trip, and film fans will recognize it from movies like The Count of Monte Cristo.

   · Non-stop passage

7. Crystal Lagoon

   Crystal Lagoon – Malta Crystal Lagoon is one of Malta’s most breathtaking hidden gems, surrounded by dramatic cliffs and fascinating sea caves that can only be explored by boat. During your private boat trip, we stop here so you can swim, snorkel, and enjoy the peaceful turquoise waters away from the crowds. Many guests even prefer Crystal Lagoon over the Blue Lagoon for its privacy, natural beauty, and calm setting — the perfect place to relax and experience Malta’s crystal-clear sea.

   · 20 min· Admission included

8. Cominotto

   Cominotto Island – Malta Cominotto Island is a small, uninhabited island opposite Comino, surrounded by some of Malta’s bluest and clearest waters. Known for its secluded sandy beach and the famous cave that passes through it, Cominotto is a peaceful paradise perfect for swimming, snorkeling, and exploring by private boat. This hidden gem offers a quieter escape beside the Blue Lagoon, where you can relax on deck or swim through crystal waters beneath dramatic limestone cliffs.

   · 10 min· Admission included

9. Cominotto Reef

   Cominotto Reef – Comino Cominotto Reef is a shallow, crystal-clear reef located near Cominotto Island, famous for its vibrant green-blue waters and fascinating marine life. This scenic area is known for octopus sightings and calm, shallow depths perfect for snorkeling and underwater photography. Our private boats are designed to navigate these shallower areas safely, allowing you to experience this hidden part of Comino up close — a peaceful spot surrounded by Malta’s most striking shades of blue and green.

   · Non-stop passage

10. Malte

    Malta – Departure Point Malta is the main island of the Maltese archipelago and the starting point for our private boat tours. Departing from the north of Malta, you’ll quickly reach the famous blue waters surrounding Comino Island and the Blue Lagoon. Our modern private boats are designed for comfort and flexibility, offering shade and space to relax as you begin your private boat tour across Malta’s crystal-clear sea. In just minutes, you’ll be surrounded by the incredible blue waters that make Malta one of the most beautiful boating destinations in Europe.

    · Non-stop passage

11. L-Għar ta' Bla Saqaf

    L-Għar ta’ Bla Saqaf – Crystal Lagoon Cave L-Għar ta’ Bla Saqaf, also known as the Crystal Lagoon Cave, is one of the most photographed and breathtaking spots in Malta. This stunning sea cave is famous for its glowing blue and green reflections, creating picture-perfect scenery ideal for photos. Accessible only by private boat, it’s one of Comino’s true hidden gems. During our stop here, you can swim directly off the boat into the crystal-clear waters and experience the cave’s magical atmosphere up close — a highlight of our private boat tour around Comino and the Blue Lagoon.

    · 10 min· Admission included

12. Alex's Cave

    Alex Cave – Comino Alex Cave is one of Comino’s most fascinating sea caves, known for its air pocket inside and incredibly blue waters. Located beside one of Comino’s small islets, this cave is popular with divers and free divers who come to experience its unique underwater atmosphere. Visiting Alex Cave by private boat is the best way to admire its crystal-clear waters and explore the area safely. On calm days, you can stop nearby for a swim straight off the boat and enjoy this hidden part of Comino’s coastline in peace.

    · Non-stop passage

13. Islet in the Comino

    Comino Islets – Malta The Comino Islets are a collection of small, rocky islands surrounding Comino, each offering stunning views and crystal-blue waters. During our private boat tour, we’ll cruise around many of these untouched islets, giving you the chance to admire their rugged beauty up close. Depending on conditions, we may stop for a refreshing swim or a cliff dive straight from the boat. These scenic spots showcase Malta’s bluest waters and make your private boat trip around Comino truly unforgettable.

    · Non-stop passage

14. L-imriek

    Imriek Reef – Comino Imriek Reef is one of Comino Island’s hidden treasures, a shallow reef surrounded by clear blue waters perfect for snorkeling and exploring marine life. This quiet spot is ideal for those who want to enjoy Comino’s underwater beauty away from the crowds. During your private boat tour, you can stop here for a relaxing swim or snorkel directly from the boat, discovering colorful fish and vibrant seabeds in one of Malta’s most peaceful snorkeling locations.

    · Non-stop passage

15. P31 Wreck – Comino The P31 is a former patrol boat that now rests beneath the clear blue waters off Comino, making it one of Malta’s most popular shallow shipwrecks. This fascinating site is perfect for snorkeling, with great visibility and plenty of marine life surrounding the wreck. During your private boat tour, you can ask the skipper to anchor above the sunken ship and enjoy a snorkel directly from the boat — an exciting underwater experience in Malta’s crystal-clear sea.

    · Non-stop passage

16. Cirkewwa

    Cirkewwa – Malta Cirkewwa is located at the northern tip of Malta and serves as the starting point for many of our private boat tours to Comino and the Blue Lagoon. This sheltered harbor is surrounded by calm, crystal-blue waters and is well known for its clear visibility and marine life, including octopus and colorful fish. Cirkewwa is also a favorite diving and snorkeling area in Malta. From here, our private boats depart smoothly toward Comino Island, reaching its bluest waters in just a few minutes for an unforgettable adventure at sea.

    · Non-stop passage

Pickup

Pickup or meet at the departure point.

If you live in mainland malta we will start from cirkewwa if you live in gozo we will start from Gozo Mgarr ferry harbour We can pick you up either at Cirkewwa marina or at Gozo marina This can be a round trip, drop you off at the starting point or if you like we can also drop you on gozo or malta island , pls let us know in advance if you require this option :)

How to use your ticket

Pick will be from next to Cirkewwa Kiosk *If you book in the last 48 hours pleases drop us a text on WhatsApp*

Meeting point

What to know before you go

• Assistance animals are permitted.
• Public transport is available nearby.
• Suitable for all fitness levels.
• Confirmation is immediate upon booking.

Travelers

Pricing per boat (up to 9 people).

Cancellation policy

Free cancellation for a full refund at least 24 hours before departure.

• No refund is possible less than 24 hours before departure.
• The activity may be cancelled in case of bad weather.

Who is it for?

• Travellers seeking a private and flexible experience.
• Snorkelling and clear-water swimming enthusiasts.
• English or Italian speakers.

What makes it different

• Entirely private excursion with a customisable itinerary.
• Access to quieter areas of the Blue Lagoon to avoid crowds.
• Option to depart from either Cirkewwa or Gozo.

Frequently asked questions

Reviews

Product code: 49599P16

Activity offered by Outdoor Explorers Malta via Viator.